PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn330151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 336aa    MW: 36888.7 Da    PI: 5.9235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn330151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.6e-3040143199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q ++e+
  Achn330151  40 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIANPIYGSVGLLWSGNWLLCQNAVEA 138
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  Achn330151 139 VLNGS 143
                 88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.54939145IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-2440138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MITCSETFQT GDSTDYRDSI QLNYIIGLGI ESKLVAMRMS CNGCRVLRKG CSDNCSIRPC  60
LQWIKSPESQ ANATVFLAKF YGRAGLINLI NAGPDHLRPA IFRSLLYEAC GRIANPIYGS  120
VGLLWSGNWL LCQNAVEAVL NGSPITQIGS EAAECDNGPP LKAYDIRHVS KEDSPAGSKD  180
LHRVRSRCRF KRSAAKPKAS RVWSAPVEDS GHDELNRSTS HESSLSHVSE AVAAAELNME  240
GESREVESVL NPNEEADDGE IELELTLGFE PSSRSHNASP KRKSTCRLGD SFDDGACRIV  300
LGLDYPSLFF FFFFGLVCFV LNFGFTFLPF VQSYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.11e-134PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-100LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A103Y0691e-122A0A103Y069_CYNCS; Lateral organ boundaries domain-containing protein
STRINGPGSC0003DMT4000329381e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-93LOB domain-containing protein 41